Accurate license

BioPortal Virtual Appliance 2.5 RC3 (OntoPortal)

This service/product is using the BioPortal Virtual Appliance 2.5 RC3. Find out more at https://www.bioontology.org/wiki/index.php/Virtual_Appliance_FAQ

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

NCI Thesaurus (NCIT)

This service/product is using the NCI Thesaurus (17.07e). Find out more at https://ncit.nci.nih.gov/. This product includes the NCI THESAURUSTM database, or is derived from the NCI THESAURUSTM database, subject to a license from the National Cancer Institute. Your use of the NCI THESAURUS database and NCI THESAURUS ontology also is subject to this license, a copy of which is available here. The current complete NCI THESAURUS database and Users' Guide are available for download at here. The NCI THESAURUS DATABASE IS PROVIDED "AS IS." ANY EXPRESS OR IMPLIED WARRANTIES ARE DISCLAIMED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. NCI THESAURUSTM is a registered trademark of the National Cancer Institute.

Human Phenotype Ontology (HP)

This service/product is using the Human Phenotype Ontology (2017-06-30). Find out more at http://www.human-phenotype-ontology.org/. Reference: Sebastian Köhler, Nicole Vasilevsky, Mark Engelstad, Erin Foster, et al. " http://nar.oxfordjournals.org/content/45/D1/D865". The Human Phenotype Ontology in 2017 Nucl. Acids Res. (2017) doi: 10.1093/nar/gkw1039

Medical Subject Headings (MeSH)

This service/product is using 2015 MeSH by the U.S. National Library of Medicine. Find out more at https://www.nlm.nih.gov/mesh/.

Foundational Model of Anatomy (FMA)

This service/product is using the Foundational Model of Anatomy (v3.2.1). Find out more at http://sig.biostr.washington.edu/projects/fm/AboutFM.html. FMA is available under a Creative Commons Attribution 3.0 License. https://creativecommons.org/licenses/by/3.0/

SNOMED CT

This service/product is using SNOMED CT (2014AA). SNOMED CT provided for demonstration purposes only with permission. Use of SNOMED CT is limited to demonstrations of ontology mapping capabilites. SNOMED CT terms or ontology structure cannot be downloaded or otherwise extracted from the product. Find out more at http://www.snomed.org/snomed-ct

Cell Ontology

(CL) This service/product is using Cell Ontology (2015-08-08). Find out more at http://obofoundry.org/ontology/cl.html.

Cell Line Ontology (CLO)

This service/product is using Cell Line Ontology (2.1.83). Find out more at http://www.clo-ontology.org. Reference: Sarntivijai S, Lin Y, Xiang Z, Meehan TF, Diehl AD, Vempati UD, Schürer TC, Pang C, Malone J, Parkinson H, Liu Y, Takatsuki T, Saijo K, Masuya H, Nakamura Y, Brush MH, Haendel MA, Zheng J, Stoeckert CJ, Peters B, Mungall CJ, Carey TE, States DJ, Athey BD, He Y. " http://www.jbiomedsem.com/content/5/1/37/abstract"CLO: The Cell Line Ontology. Journal of Biomedical Semantics. 2014, 5:37. doi:10.1186/2041-1480-5-37. PMID: " http://www.ncbi.nlm.nih.gov/pubmed/25852852"25852852. PMCID: " http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4387853/"PMC4387853.

Human Disease Ontology (DOID)

This service/product is using Disease Ontology (2016-07-08). Find out more at http://disease-ontology.org/. DOID is available under a CC0 1.0 Universal License. https://creativecommons.org/publicdomain/zero/1.0/ Reference: Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data Kibbe WA, Arze C, Felix V, Mitraka E, Bolton E, Fu G, Mungall CJ, Binder JX, Malone J, Vasant D, Parkinson H, Schriml LM. Nucleic Acids Research 2014; Oct 27. pii: gku1011 Disease Ontology: a backbone for disease semantic integration Lynn Marie Schriml; Cesar Arze; Suvarna Nadendla; Yu-Wei Wayne Chang; Mark Mazaitis; Victor Felix; Gang Feng; Warren Alden Kibbe Nucleic Acids Research 2011; doi: 10.1093/nar/gkr972

The Drug Ontology (DrOn)

This service/product is using the Drug Ontology (July 2015). Find out more at https://ontology.atlassian.net/wiki/spaces/DRON/overview. DrOn is available under a Creative Commons Attribution 3.0 License. https://creativecommons.org/licenses/by/3.0/ Reference: Hanna J, Joseph E, Brochhausen M, Hogan WR. Building a drug ontology based on RxNorm and other sources. Journal of Biomedical Semantics. 2013;4:44. doi:10.1186/2041-1480-4-44.

Gene Ontology (GO)

This service/product is using the Gene Ontology (2016-01-22). Find out more at http://www.geneontology.org/. GO is available under a Creative Commons Attribution 4.0 Unported License. https://creativecommons.org/licenses/by/4.0/legalcode Reference: Ashburner et al. Gene ontology: tool for the unification of biology (2000) Nat Genet 25(1):25-9. The Gene Ontology Consortium. Expansion of the Gene Ontology knowledgebase and resources. Nucleic Acids Research. 2017;45(Database issue):D331-D338. doi:10.1093/nar/gkw1108.

Human Genome Organization Gene Symbols (HUGO)

This service/product is using Human Genome Organization Gene Symbols (July 2010) by the HUGO Gene Nomenclature Committee at the European Bioinformatics Institute. Find out more at https://www.genenames.org/.

Ontology for Biobanking (OBIB)

This service/product is using the Ontology for Biobanking (2015-11-22). Find out more at https://github.com/biobanking/biobanking. OBIB is available under a Creative Commons Attribution 3.0 License. https://creativecommons.org/licenses/by/3.0/ Reference: Mathias Brochhausen, Jie Zheng, David Birtwell, Heather Williams, Anna Maria Masci, Helena Judge Ellis and Christian J. Stoeckert Jr. “OBIB-a novel ontology for biobanking” Journal of Biomedical Semantics (2016) 7:23 http://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0068-y

PLOS Thesaurus (PLOSTHES)

This service/product is using the PLOS Thesaurus (plosthes.2015-4). Find out more at https://github.com/PLOS/plos-thesaurus. PLOSTHES is available under a CC0 “No Rights Reserved” License. http://creativecommons.org/about/cc0

Ontology of Genes and Genomes (OGG)

This service/product is using the Ontology of Genes and Genomes (Vision Release: 1.0.59). Find out more at https://bitbucket.org/hegroup/ogg. OGG is available under a Creative Commons Attribution 3.0 License. https://creativecommons.org/licenses/by/3.0/

Uber Anatomy Ontology (UBERON)

This service/product is using the Uber Anatomy Ontology (2014-06-15). Find out more at http://uberon.github.io/. UBERON is available under a Creative Commons Attribution 3.0 License. https://creativecommons.org/licenses/by/3.0/ Reference: http://genomebiology.com/2012/13/1/R5 Uberon, an integrative multi-species anatomy ontology Mungall, C. J., Torniai, C., Gkoutos, G. V., Lewis, S. E., and Haendel, M. A. (2012) Genome Biology 13, R5. http://www.ncbi.nlm.nih.gov/pubmed/22293552 PMID:22293552 http://www.jbiomedsem.com/content/5/1/21 Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon Haendel, Melissa A; Balhoff, James P; Bastian, Frederic B; Blackburn, David C; Blake, Judith A; Bradford, Yvonne; Comte, Aurelie; Dahdul, Wasila M; Dececchi, Thomas A; Druzinsky, Robert E; Hayamizu, Terry F; Ibrahim, Nizar; Lewis, Suzanna E; Mabee, Paula M; Niknejad, Anne; Robinson-Rechavi, Marc; Sereno, Paul C; Mungall, Christopher J (2014) Journal of Biomedical Semantics, 5(1), 21. doi:10.1186/2041-1480-5-21

Chemical Entities of Biological Interest (ChEBI)

This service/product is using the ChEBI (154) Find out more at https://www.ebi.ac.uk/chebi/.